CRG Barcelona Summer School on Systems Biology (2011-2014)Lecture on Static Network Inference: Static
Lecture on Stochastic Network Inference: Stochastic
BCH4300B Winter 2014Homework 1: Assignment Solutions
Discussion paper for March 6: Henikoff & Henikoff "Amino acid substitution matrices from protein blocks" PNAS, Vol. 89, pp. 10915+, 1992.
Discussion paper for March 19: Edgar "MUSCLE: multiple sequence alignment with high accuracy and high throughput" Nucleic Acids Research, Vol. 32, No. 5, 2004.
BCH5101 Winter 2014Here are the lecture slides for March 12: Overview Network analysis: Part A Part B Part C Network inference: Part A Part B
For March 19 we will discuss two papers: (1) Zhang et al., "Model-based Analysis of ChIP-Seq (MACS)" Genome Biology 2008, 9:R137. (2) Rapaport et al., "Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data" Genome Biology 2013, 14:R95.