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A MATLAB implementation of BIDCHIPS

This page contains software in support of P. Ramachandran, G. A. Palidwor, and T. J. Perkins, (2015), "BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates" Epigenetics & Chromatin , 8:33.

Below you can download the MATLAB version of the software (bidchips.m) containing code implementing the method described in the paper. Usage instructions can be found in comments at the top of the file, or by typing "help bidchips" at the MATLAB command window when the file is added to the MATLAB path. The code is free for non-commercial use. For feedback or questions, please e-mail or

README.txt1.71 KB
bidchips.m31.02 KB